HL_4V6N_002
3D structure
- PDB id
- 4V6N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 12.1 Å
Loop
- Sequence
- GGUCUCC
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V6N_002 not in the Motif Atlas
- Homologous match to HL_5J7L_204
- Geometric discrepancy: 0.5862
- The information below is about HL_5J7L_204
- Detailed Annotation
- Mini UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_48778.2
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 46
Unit IDs
4V6N|1|AA|G|85
4V6N|1|AA|G|86
4V6N|1|AA|U|87
4V6N|1|AA|C|88
4V6N|1|AA|U|89
4V6N|1|AA|C|90
4V6N|1|AA|C|91
Current chains
- Chain AA
- 5S ribosomal RNA
Nearby chains
- Chain A1
- 50S ribosomal protein L30
- Chain AB
- Large subunit ribosomal RNA; LSU rRNA
- Chain AO
- 50S ribosomal protein L16
- Chain AX
- 50S ribosomal protein L25
Coloring options: