HL_4V6N_003
3D structure
- PDB id
- 4V6N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 12.1 Å
Loop
- Sequence
- UGCUAAUCUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V6N_003 not in the Motif Atlas
- Homologous match to HL_7A0S_001
- Geometric discrepancy: 0.4508
- The information below is about HL_7A0S_001
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_93438.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
4V6N|1|AB|U|59
4V6N|1|AB|G|60
4V6N|1|AB|C|61
4V6N|1|AB|U|62
4V6N|1|AB|A|63
4V6N|1|AB|A|64
4V6N|1|AB|U|65
4V6N|1|AB|C|66
4V6N|1|AB|U|67
4V6N|1|AB|G|68
Current chains
- Chain AB
- 23S ribosomal RNA
Nearby chains
- Chain A0
- 50S ribosomal protein L29
- Chain A5
- 50S ribosomal protein L34
- Chain AV
- 50S ribosomal protein L23
Coloring options: