HL_4V6N_027

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

CAUCCCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6N_027 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.313

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

4V6N|1|AB|C|885
4V6N|1|AB|A|886
4V6N|1|AB|U|887
4V6N|1|AB|C|888
4V6N|1|AB|C|889
4V6N|1|AB|C|890
4V6N|1|AB|G|891

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain BP

30S ribosomal protein S13

Chain BV

30S ribosomal protein S19