HL_4V6N_029

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

4V6N|1|AB|A|980

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6N_029 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.2423

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

4V6N|1|AB|G|978
4V6N|1|AB|A|979
4V6N|1|AB|A|980
4V6N|1|AB|A|981
4V6N|1|AB|C|982
4V6N|1|AB|A|983
4V6N|1|AB|A|984
4V6N|1|AB|C|985

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain A1

50S ribosomal protein L30

Chain AA

5S ribosomal RNA; 5S rRNA

Chain AS

50S ribosomal protein L20

Chain AT

50S ribosomal protein L21