HL_4V6N_030

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6N_030 not in the Motif Atlas

Homologous match to HL_6PRV_001

Geometric discrepancy: 0.3786

The information below is about HL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V6N|1|AB|C|1064
4V6N|1|AB|U|1065
4V6N|1|AB|U|1066
4V6N|1|AB|A|1067
4V6N|1|AB|G|1068
4V6N|1|AB|A|1069
4V6N|1|AB|A|1070
4V6N|1|AB|G|1071
4V6N|1|AB|C|1072
4V6N|1|AB|A|1073
4V6N|1|AB|G|1074

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain AH

50S ribosomal protein L6

Chain AK

50S ribosomal protein L11