HL_4V6N_050

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

G(PSU)AAC(3TD)A(PSU)AAC

Length

11 nucleotides

Bulged bases

4V6N|1|AB|A|1913

QA status

Modified nucleotides: PSU, 3TD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6N_050 not in the Motif Atlas

Homologous match to HL_5J7L_181

Geometric discrepancy: 0.2703

The information below is about HL_5J7L_181

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

4V6N|1|AB|G|1910
4V6N|1|AB|PSU|1911
4V6N|1|AB|A|1912
4V6N|1|AB|A|1913
4V6N|1|AB|C|1914
4V6N|1|AB|3TD|1915
4V6N|1|AB|A|1916
4V6N|1|AB|PSU|1917
4V6N|1|AB|A|1918
4V6N|1|AB|A|1919
4V6N|1|AB|C|1920

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain BA

Small subunit ribosomal RNA; SSU rRNA

Chain BB

Transfer RNA; tRNA

Chain BD

Transfer RNA; tRNA