HL_4V6N_054

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GUAAUCC

Length

7 nucleotides

Bulged bases

4V6N|1|AB|A|2211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6N_054 not in the Motif Atlas

Homologous match to HL_5J7L_185

Geometric discrepancy: 0.3459

The information below is about HL_5J7L_185

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49922.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

4V6N|1|AB|G|2209
4V6N|1|AB|U|2210
4V6N|1|AB|A|2211
4V6N|1|AB|A|2212
4V6N|1|AB|U|2213
4V6N|1|AB|C|2214
4V6N|1|AB|C|2215

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain AZ

50S ribosomal protein L28