HL_4V6N_056

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

4V6N|1|AB|G|2308

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6N_056 not in the Motif Atlas

Geometric match to HL_8C3A_039

Geometric discrepancy: 0.3025

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

4V6N|1|AB|G|2303
4V6N|1|AB|G|2304
4V6N|1|AB|U|2305
4V6N|1|AB|C|2306
4V6N|1|AB|G|2307
4V6N|1|AB|G|2308
4V6N|1|AB|A|2309
4V6N|1|AB|C|2310
4V6N|1|AB|A|2311
4V6N|1|AB|U|2312
4V6N|1|AB|C|2313

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain AA

5S ribosomal RNA; 5S rRNA

Chain AG

50S ribosomal protein L5