HL_4V6N_063

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

C(OMU)GUUCG

Length

7 nucleotides

Bulged bases

4V6N|1|AB|G|2553

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6N_063 not in the Motif Atlas

Homologous match to HL_4WF9_058

Geometric discrepancy: 0.4844

The information below is about HL_4WF9_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4V6N|1|AB|C|2551
4V6N|1|AB|OMU|2552
4V6N|1|AB|G|2553
4V6N|1|AB|U|2554
4V6N|1|AB|U|2555
4V6N|1|AB|C|2556
4V6N|1|AB|G|2557

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain BB

Transfer RNA; tRNA