HL_4V6N_088

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

4V6N|1|BA|C|841, 4V6N|1|BA|U|843, 4V6N|1|BA|A|845

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6N_088 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3886

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

4V6N|1|BA|C|840
4V6N|1|BA|C|841
4V6N|1|BA|U|842
4V6N|1|BA|U|843
4V6N|1|BA|G|844
4V6N|1|BA|A|845
4V6N|1|BA|G|846

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BE

30S ribosomal protein S2

Chain BU

30S ribosomal protein S18