HL_4V6N_098

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6N_098 not in the Motif Atlas

Homologous match to HL_5J7L_027

Geometric discrepancy: 0.3754

The information below is about HL_5J7L_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4V6N|1|BA|C|1265
4V6N|1|BA|G|1266
4V6N|1|BA|C|1267
4V6N|1|BA|G|1268
4V6N|1|BA|A|1269
4V6N|1|BA|G|1270

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain A2

50S ribosomal protein L31

Chain BP

30S ribosomal protein S13

Chain BQ

30S ribosomal protein S14

Chain BV

30S ribosomal protein S19