HL_4V6N_104

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

U(OMC)UCCA(MIA)AA

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6N_104 not in the Motif Atlas

Homologous match to HL_4V9Q_214

Geometric discrepancy: 0.368

The information below is about HL_4V9Q_214

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_81376.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

29

Unit IDs

4V6N|1|BB|U|31
4V6N|1|BB|OMC|32
4V6N|1|BB|U|33
4V6N|1|BB|C|34
4V6N|1|BB|C|35
4V6N|1|BB|A|36
4V6N|1|BB|MIA|37
4V6N|1|BB|A|38
4V6N|1|BB|A|39

Current chains

Chain BB

A site tRNA

Nearby chains

Chain AB

Large subunit ribosomal RNA; LSU rRNA

Chain BA

Small subunit ribosomal RNA; SSU rRNA

Chain BC

mRNA

Chain BO

30S ribosomal protein S12