HL_4V6N_118

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

UGCAAUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6N_118 not in the Motif Atlas

Homologous match to HL_5J7L_189

Geometric discrepancy: 0.2843

The information below is about HL_5J7L_189

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

4V6N|1|AB|U|2324
4V6N|1|AB|G|2325
4V6N|1|AB|C|2326
4V6N|1|AB|A|2327
4V6N|1|AB|A|2328
4V6N|1|AB|U|2329
4V6N|1|AB|G|2330
4V6N|1|AB|G|2331

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain AG

50S ribosomal protein L5

Chain AY

50S ribosomal protein L27

Chain BD

Transfer RNA; tRNA