HL_4V6O_003

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6O_003 not in the Motif Atlas

Homologous match to HL_5J7L_003

Geometric discrepancy: 0.3509

The information below is about HL_5J7L_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V6O|1|AA|G|158
4V6O|1|AA|G|159
4V6O|1|AA|A|160
4V6O|1|AA|A|161
4V6O|1|AA|A|162
4V6O|1|AA|C|163

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain BR

50S ribosomal protein L19