HL_4V6O_006

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

4V6O|1|AA|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6O_006 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.3848

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4V6O|1|AA|G|259
4V6O|1|AA|G|260
4V6O|1|AA|U|261
4V6O|1|AA|A|262
4V6O|1|AA|A|263
4V6O|1|AA|C|264
4V6O|1|AA|G|265
4V6O|1|AA|G|266
4V6O|1|AA|C|267

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AT

30S ribosomal protein S17

Chain AW

30S ribosomal protein S20