HL_4V6O_044

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

UUUCGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6O_044 not in the Motif Atlas

Geometric match to HL_8C3A_196

Geometric discrepancy: 0.3782

The information below is about HL_8C3A_196

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_23696.2

Basepair signature

cWW-F-F

Number of instances in this motif group

8

Unit IDs

4V6O|1|BB|U|137
4V6O|1|BB|U|138
4V6O|1|BB|U|139
4V6O|1|BB|C|140
4V6O|1|BB|G|141
4V6O|1|BB|A|142

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain B0

50S ribosomal protein L29

Chain BV

50S ribosomal protein L23