HL_4V6O_047

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

CAACCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6O_047 not in the Motif Atlas

Homologous match to HL_5J7L_140

Geometric discrepancy: 0.3712

The information below is about HL_5J7L_140

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_62934.1

Basepair signature

cWW-tSH-F

Number of instances in this motif group

2

Unit IDs

4V6O|1|BB|C|225
4V6O|1|BB|A|226
4V6O|1|BB|A|227
4V6O|1|BB|C|228
4V6O|1|BB|C|229
4V6O|1|BB|G|230

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BN

50S ribosomal protein L15