HL_4V6O_051

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

4V6O|1|BB|G|329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6O_051 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.1873

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

4V6O|1|BB|G|327
4V6O|1|BB|U|328
4V6O|1|BB|G|329
4V6O|1|BB|A|330
4V6O|1|BB|C|331
4V6O|1|BB|A|332
4V6O|1|BB|G|333
4V6O|1|BB|C|334
4V6O|1|BB|C|335

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BF

50S ribosomal protein L4

Chain BW

50S ribosomal protein L24