HL_4V6O_067

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

4V6O|1|BB|A|980

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6O_067 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.2462

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

4V6O|1|BB|G|978
4V6O|1|BB|A|979
4V6O|1|BB|A|980
4V6O|1|BB|A|981
4V6O|1|BB|C|982
4V6O|1|BB|A|983
4V6O|1|BB|A|984
4V6O|1|BB|C|985

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BA

5S ribosomal RNA; 5S rRNA

Chain BS

50S ribosomal protein L20

Chain BT

50S ribosomal protein L21