HL_4V6O_073

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

GUUAAUC

Length

7 nucleotides

Bulged bases

4V6O|1|BB|U|1325, 4V6O|1|BB|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6O_073 not in the Motif Atlas

Geometric match to HL_5T16_002

Geometric discrepancy: 0.312

The information below is about HL_5T16_002

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_56334.1

Basepair signature

cWW-F

Number of instances in this motif group

16

Unit IDs

4V6O|1|BB|G|1324
4V6O|1|BB|U|1325
4V6O|1|BB|U|1326
4V6O|1|BB|A|1327
4V6O|1|BB|A|1328
4V6O|1|BB|U|1329
4V6O|1|BB|C|1330

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BP

50S ribosomal protein L17

Chain BU

50S ribosomal protein L22