HL_4V6O_092

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

CGUAAUCCG

Length

9 nucleotides

Bulged bases

4V6O|1|BB|A|2211, 4V6O|1|BB|U|2213

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6O_092 not in the Motif Atlas

Homologous match to HL_4WF9_069

Geometric discrepancy: 0.4051

The information below is about HL_4WF9_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_83003.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

4V6O|1|BB|C|2208
4V6O|1|BB|G|2209
4V6O|1|BB|U|2210
4V6O|1|BB|A|2211
4V6O|1|BB|A|2212
4V6O|1|BB|U|2213
4V6O|1|BB|C|2214
4V6O|1|BB|C|2215
4V6O|1|BB|G|2216

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BI

50S ribosomal protein L9

Chain BZ

50S ribosomal protein L28