3D structure

PDB id
4V6O (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)
Experimental method
ELECTRON MICROSCOPY
Resolution
14.7 Å

Loop

Sequence
CUAAAGAGUAACG
Length
13 nucleotides
Bulged bases
4V6O|1|BB|A|2268, 4V6O|1|BB|C|2275
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V6O_093 not in the Motif Atlas
Homologous match to HL_7RQB_054
Geometric discrepancy: 0.3719
The information below is about HL_7RQB_054
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_19870.6
Basepair signature
cWW-tSH-tHH-tWW-F-F-F
Number of instances in this motif group
7

Unit IDs

4V6O|1|BB|C|2264
4V6O|1|BB|U|2265
4V6O|1|BB|A|2266
4V6O|1|BB|A|2267
4V6O|1|BB|A|2268
4V6O|1|BB|G|2269
4V6O|1|BB|A|2270
4V6O|1|BB|G|2271
4V6O|1|BB|U|2272
4V6O|1|BB|A|2273
4V6O|1|BB|A|2274
4V6O|1|BB|C|2275
4V6O|1|BB|G|2276

Current chains

Chain BB
23S ribomosomal RNA

Nearby chains

Chain AD
Transfer RNA; tRNA
Chain BA
5S ribosomal RNA; 5S rRNA
Chain BO
50S ribosomal protein L16
Chain BY
50S ribosomal protein L27

Coloring options:


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