HL_4V6O_105

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

4V6O|1|BB|G|2751, 4V6O|1|BB|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6O_105 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.1899

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

4V6O|1|BB|C|2745
4V6O|1|BB|U|2746
4V6O|1|BB|G|2747
4V6O|1|BB|A|2748
4V6O|1|BB|A|2749
4V6O|1|BB|A|2750
4V6O|1|BB|G|2751
4V6O|1|BB|C|2752
4V6O|1|BB|A|2753
4V6O|1|BB|U|2754
4V6O|1|BB|C|2755
4V6O|1|BB|U|2756
4V6O|1|BB|A|2757
4V6O|1|BB|A|2758
4V6O|1|BB|G|2759

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain B7

50S ribosomal protein L36

Chain BH

50S ribosomal protein L6

Chain BL

50S ribosomal protein L13