HL_4V6O_106

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

UUUAA

Length

5 nucleotides

Bulged bases

4V6O|1|BB|A|2799

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6O_106 not in the Motif Atlas

Geometric match to HL_5J7L_176

Geometric discrepancy: 0.2708

The information below is about HL_5J7L_176

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32346.4

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

4V6O|1|BB|U|2796
4V6O|1|BB|U|2797
4V6O|1|BB|U|2798
4V6O|1|BB|A|2799
4V6O|1|BB|A|2800

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains