HL_4V6P_034
3D structure
- PDB id
- 4V6P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 13.5 Å
Loop
- Sequence
- U(OMC)UCCA(MIA)AA
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMC, MIA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V6P_034 not in the Motif Atlas
- Homologous match to HL_4V9Q_214
- Geometric discrepancy: 0.3531
- The information below is about HL_4V9Q_214
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.6
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
4V6P|1|AB|U|31
4V6P|1|AB|OMC|32
4V6P|1|AB|U|33
4V6P|1|AB|C|34
4V6P|1|AB|C|35
4V6P|1|AB|A|36
4V6P|1|AB|MIA|37
4V6P|1|AB|A|38
4V6P|1|AB|A|39
Current chains
- Chain AB
- A site tRNA
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AC
- mRNA
- Chain AO
- 30S ribosomal protein S12
- Chain AV
- 30S ribosomal protein S19
- Chain BB
- Large subunit ribosomal RNA; LSU rRNA
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