HL_4V6P_049

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6P_049 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.2811

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

4V6P|1|BB|C|305
4V6P|1|BB|U|306
4V6P|1|BB|G|307
4V6P|1|BB|G|308
4V6P|1|BB|A|309
4V6P|1|BB|A|310
4V6P|1|BB|A|311
4V6P|1|BB|G|312

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BW

50S ribosomal protein L24