HL_4V6P_071

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

UGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6P_071 not in the Motif Atlas

Homologous match to HL_5J7L_164

Geometric discrepancy: 0.4824

The information below is about HL_5J7L_164

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V6P|1|BB|U|1222
4V6P|1|BB|G|1223
4V6P|1|BB|U|1224
4V6P|1|BB|G|1225
4V6P|1|BB|A|1226
4V6P|1|BB|G|1227

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BN

50S ribosomal protein L15

Chain BS

50S ribosomal protein L20

Chain BT

50S ribosomal protein L21