HL_4V6P_073

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

GUUAAUC

Length

7 nucleotides

Bulged bases

4V6P|1|BB|U|1325, 4V6P|1|BB|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6P_073 not in the Motif Atlas

Homologous match to HL_7A0S_033

Geometric discrepancy: 0.2536

The information below is about HL_7A0S_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

4V6P|1|BB|G|1324
4V6P|1|BB|U|1325
4V6P|1|BB|U|1326
4V6P|1|BB|A|1327
4V6P|1|BB|A|1328
4V6P|1|BB|U|1329
4V6P|1|BB|C|1330

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BP

50S ribosomal protein L17

Chain BU

50S ribosomal protein L22