HL_4V6P_078

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

ACUACGGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6P_078 not in the Motif Atlas

Geometric match to HL_7MLW_004

Geometric discrepancy: 0.348

The information below is about HL_7MLW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_83003.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

4V6P|1|BB|A|1532
4V6P|1|BB|C|1533
4V6P|1|BB|U|1534
4V6P|1|BB|A|1535
4V6P|1|BB|C|1536
4V6P|1|BB|G|1537
4V6P|1|BB|G|1538
4V6P|1|BB|U|1539

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains