3D structure

PDB id
4V6P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)
Experimental method
ELECTRON MICROSCOPY
Resolution
13.5 Å

Loop

Sequence
G(PSU)AAC(3TD)A(PSU)AAC
Length
11 nucleotides
Bulged bases
4V6P|1|BB|A|1916
QA status
Modified nucleotides: PSU, 3TD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V6P_088 not in the Motif Atlas
Homologous match to HL_5J7L_181
Geometric discrepancy: 0.2734
The information below is about HL_5J7L_181
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_25847.2
Basepair signature
cWW-F-cSH-tHW-F-F-F
Number of instances in this motif group
3

Unit IDs

4V6P|1|BB|G|1910
4V6P|1|BB|PSU|1911
4V6P|1|BB|A|1912
4V6P|1|BB|A|1913
4V6P|1|BB|C|1914
4V6P|1|BB|3TD|1915
4V6P|1|BB|A|1916
4V6P|1|BB|PSU|1917
4V6P|1|BB|A|1918
4V6P|1|BB|A|1919
4V6P|1|BB|C|1920

Current chains

Chain BB
23S ribomosomal RNA

Nearby chains

Chain AA
Small subunit ribosomal RNA; SSU rRNA
Chain AB
Transfer RNA; tRNA
Chain AO
30S ribosomal protein S12

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