HL_4V6P_095

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6P_095 not in the Motif Atlas

Geometric match to HL_8C3A_039

Geometric discrepancy: 0.344

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

4V6P|1|BB|G|2303
4V6P|1|BB|G|2304
4V6P|1|BB|U|2305
4V6P|1|BB|C|2306
4V6P|1|BB|G|2307
4V6P|1|BB|G|2308
4V6P|1|BB|A|2309
4V6P|1|BB|C|2310
4V6P|1|BB|A|2311
4V6P|1|BB|U|2312
4V6P|1|BB|C|2313

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain B2

50S ribosomal protein L31

Chain BA

5S ribosomal RNA; 5S rRNA

Chain BG

50S ribosomal protein L5