HL_4V6P_101

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

UGAAGUAG

Length

8 nucleotides

Bulged bases

4V6P|1|BB|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6P_101 not in the Motif Atlas

Homologous match to HL_7RQB_061

Geometric discrepancy: 0.2072

The information below is about HL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91104.1

Basepair signature

cWW-F

Number of instances in this motif group

12

Unit IDs

4V6P|1|BB|U|2528
4V6P|1|BB|G|2529
4V6P|1|BB|A|2530
4V6P|1|BB|A|2531
4V6P|1|BB|G|2532
4V6P|1|BB|U|2533
4V6P|1|BB|A|2534
4V6P|1|BB|G|2535

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain B7

50S ribosomal protein L36

Chain BH

50S ribosomal protein L6