HL_4V6Q_006

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

4V6Q|1|AA|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6Q_006 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.1929

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4V6Q|1|AA|G|259
4V6Q|1|AA|G|260
4V6Q|1|AA|U|261
4V6Q|1|AA|A|262
4V6Q|1|AA|A|263
4V6Q|1|AA|C|264
4V6Q|1|AA|G|265
4V6Q|1|AA|G|266
4V6Q|1|AA|C|267

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AT

30S ribosomal protein S17

Chain AW

30S ribosomal protein S20