HL_4V6Q_007

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

UGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6Q_007 not in the Motif Atlas

Homologous match to HL_5J7L_007

Geometric discrepancy: 0.1978

The information below is about HL_5J7L_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4V6Q|1|AA|U|296
4V6Q|1|AA|G|297
4V6Q|1|AA|A|298
4V6Q|1|AA|G|299
4V6Q|1|AA|A|300
4V6Q|1|AA|G|301

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AG

30S ribosomal protein S4

Chain AH

30S ribosomal protein S5

Chain AT

30S ribosomal protein S17