HL_4V6Q_052

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

GACACGUGGUAUC

Length

13 nucleotides

Bulged bases

4V6Q|1|BB|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6Q_052 not in the Motif Atlas

Homologous match to HL_4WF9_013

Geometric discrepancy: 0.5632

The information below is about HL_4WF9_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69139.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V6Q|1|BB|G|381
4V6Q|1|BB|A|382
4V6Q|1|BB|C|383
4V6Q|1|BB|A|384
4V6Q|1|BB|C|385
4V6Q|1|BB|G|386
4V6Q|1|BB|U|387
4V6Q|1|BB|G|388
4V6Q|1|BB|G|389
4V6Q|1|BB|U|390
4V6Q|1|BB|A|391
4V6Q|1|BB|U|392
4V6Q|1|BB|C|393

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain B6

50S ribosomal protein L35

Chain BN

50S ribosomal protein L15

Chain BZ

50S ribosomal protein L28