HL_4V6Q_064

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

AUUUAGGU

Length

8 nucleotides

Bulged bases

4V6Q|1|BB|U|827, 4V6Q|1|BB|G|830

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6Q_064 not in the Motif Atlas

Geometric match to HL_5TBW_012

Geometric discrepancy: 0.3513

The information below is about HL_5TBW_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.1

Basepair signature

cWW-F-F

Number of instances in this motif group

7

Unit IDs

4V6Q|1|BB|A|825
4V6Q|1|BB|U|826
4V6Q|1|BB|U|827
4V6Q|1|BB|U|828
4V6Q|1|BB|A|829
4V6Q|1|BB|G|830
4V6Q|1|BB|G|831
4V6Q|1|BB|U|832

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain B6

50S ribosomal protein L35

Chain BN

50S ribosomal protein L15

Chain BY

50S ribosomal protein L27