HL_4V6Q_081

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

UAGAGAAUA

Length

9 nucleotides

Bulged bases

4V6Q|1|BB|A|1634

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6Q_081 not in the Motif Atlas

Homologous match to HL_4WF9_039

Geometric discrepancy: 0.5541

The information below is about HL_4WF9_039

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_45359.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

4V6Q|1|BB|U|1629
4V6Q|1|BB|A|1630
4V6Q|1|BB|G|1631
4V6Q|1|BB|A|1632
4V6Q|1|BB|G|1633
4V6Q|1|BB|A|1634
4V6Q|1|BB|A|1635
4V6Q|1|BB|U|1636
4V6Q|1|BB|A|1637

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains