HL_4V6Q_082

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

4V6Q|1|BB|U|1693

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6Q_082 not in the Motif Atlas

Homologous match to HL_7RQB_042

Geometric discrepancy: 0.1794

The information below is about HL_7RQB_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_03562.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

56

Unit IDs

4V6Q|1|BB|C|1691
4V6Q|1|BB|U|1692
4V6Q|1|BB|U|1693
4V6Q|1|BB|C|1694
4V6Q|1|BB|G|1695
4V6Q|1|BB|G|1696

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BD

50S ribosomal protein L2