HL_4V6Q_088

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

G(PSU)AAC(3TD)A(PSU)AAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, 3TD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6Q_088 not in the Motif Atlas

Homologous match to HL_5J7L_181

Geometric discrepancy: 0.2869

The information below is about HL_5J7L_181

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

4V6Q|1|BB|G|1910
4V6Q|1|BB|PSU|1911
4V6Q|1|BB|A|1912
4V6Q|1|BB|A|1913
4V6Q|1|BB|C|1914
4V6Q|1|BB|3TD|1915
4V6Q|1|BB|A|1916
4V6Q|1|BB|PSU|1917
4V6Q|1|BB|A|1918
4V6Q|1|BB|A|1919
4V6Q|1|BB|C|1920

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AB

Transfer RNA; tRNA

Chain AO

30S ribosomal protein S12