HL_4V6Q_090
3D structure
- PDB id
- 4V6Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 11.5 Å
Loop
- Sequence
- GUG(6MZ)AGAUGC
- Length
- 10 nucleotides
- Bulged bases
- 4V6Q|1|BB|A|2031, 4V6Q|1|BB|G|2032
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V6Q_090 not in the Motif Atlas
- Homologous match to HL_9DFE_048
- Geometric discrepancy: 0.328
- The information below is about HL_9DFE_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_78372.1
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
4V6Q|1|BB|G|2027
4V6Q|1|BB|U|2028
4V6Q|1|BB|G|2029
4V6Q|1|BB|6MZ|2030
4V6Q|1|BB|A|2031
4V6Q|1|BB|G|2032
4V6Q|1|BB|A|2033
4V6Q|1|BB|U|2034
4V6Q|1|BB|G|2035
4V6Q|1|BB|C|2036
Current chains
- Chain BB
- 23S ribomosomal RNA
Nearby chains
- Chain B3
- 50S ribosomal protein L32
- Chain BE
- 50S ribosomal protein L3
- Chain BL
- 50S ribosomal protein L13
- Chain BT
- 50S ribosomal protein L21
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