HL_4V6Q_096

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

UGCAAUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6Q_096 not in the Motif Atlas

Homologous match to HL_7A0S_055

Geometric discrepancy: 0.3217

The information below is about HL_7A0S_055

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

4V6Q|1|BB|U|2324
4V6Q|1|BB|G|2325
4V6Q|1|BB|C|2326
4V6Q|1|BB|A|2327
4V6Q|1|BB|A|2328
4V6Q|1|BB|U|2329
4V6Q|1|BB|G|2330
4V6Q|1|BB|G|2331

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BG

50S ribosomal protein L5

Chain BY

50S ribosomal protein L27