HL_4V6Q_102

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

C(OMU)GUUCG

Length

7 nucleotides

Bulged bases

4V6Q|1|BB|G|2553

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6Q_102 not in the Motif Atlas

Homologous match to HL_5J7L_195

Geometric discrepancy: 0.5951

The information below is about HL_5J7L_195

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4V6Q|1|BB|C|2551
4V6Q|1|BB|OMU|2552
4V6Q|1|BB|G|2553
4V6Q|1|BB|U|2554
4V6Q|1|BB|U|2555
4V6Q|1|BB|C|2556
4V6Q|1|BB|G|2557

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain AB

Transfer RNA; tRNA

Chain BM

50S ribosomal protein L14