HL_4V6Q_117

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

4V6Q|1|BB|G|411

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6Q_117 not in the Motif Atlas

Homologous match to HL_9DFE_013

Geometric discrepancy: 0.2288

The information below is about HL_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

4V6Q|1|BB|G|410
4V6Q|1|BB|G|411
4V6Q|1|BB|A|412
4V6Q|1|BB|C|413
4V6Q|1|BB|C|414
4V6Q|1|BB|A|415
4V6Q|1|BB|U|416
4V6Q|1|BB|C|417

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains