HL_4V6R_013

3D structure

PDB id

4V6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

GCAGCC(7MG)C

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6R_013 not in the Motif Atlas

Geometric match to HL_6D12_002

Geometric discrepancy: 0.1975

The information below is about HL_6D12_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.6

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

4V6R|1|AA|G|521
4V6R|1|AA|C|522
4V6R|1|AA|A|523
4V6R|1|AA|G|524
4V6R|1|AA|C|525
4V6R|1|AA|C|526
4V6R|1|AA|7MG|527
4V6R|1|AA|C|528

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AC

mRNA

Chain AO

30S ribosomal protein S12