HL_4V6R_044

3D structure

PDB id

4V6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

UUUCGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6R_044 not in the Motif Atlas

Geometric match to HL_6CK5_001

Geometric discrepancy: 0.2937

The information below is about HL_6CK5_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

49

Unit IDs

4V6R|1|BB|U|137
4V6R|1|BB|U|138
4V6R|1|BB|U|139
4V6R|1|BB|C|140
4V6R|1|BB|G|141
4V6R|1|BB|A|142

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BV

50S ribosomal protein L23