HL_4V6R_053

3D structure

PDB id

4V6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

GGGACCAUCC

Length

10 nucleotides

Bulged bases

4V6R|1|BB|G|411

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6R_053 not in the Motif Atlas

Geometric match to HL_4V83_139

Geometric discrepancy: 0.2869

The information below is about HL_4V83_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53597.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

4V6R|1|BB|G|409
4V6R|1|BB|G|410
4V6R|1|BB|G|411
4V6R|1|BB|A|412
4V6R|1|BB|C|413
4V6R|1|BB|C|414
4V6R|1|BB|A|415
4V6R|1|BB|U|416
4V6R|1|BB|C|417
4V6R|1|BB|C|418

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains