HL_4V6R_121

3D structure

PDB id

4V6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

CUGAAUGGAAGG

Length

12 nucleotides

Bulged bases

4V6R|1|BB|A|2406, 4V6R|1|BB|A|2412

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6R_121 not in the Motif Atlas

Geometric match to HL_8KAH_003

Geometric discrepancy: 0.3918

The information below is about HL_8KAH_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89457.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

4V6R|1|BB|C|2403
4V6R|1|BB|U|2404
4V6R|1|BB|G|2405
4V6R|1|BB|A|2406
4V6R|1|BB|A|2407
4V6R|1|BB|U|2408
4V6R|1|BB|G|2409
4V6R|1|BB|G|2410
4V6R|1|BB|A|2411
4V6R|1|BB|A|2412
4V6R|1|BB|G|2413
4V6R|1|BB|G|2414

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BN

50S ribosomal protein L15