HL_4V6S_003

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

UGCUAAUCUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6S_003 not in the Motif Atlas

Homologous match to HL_7RQB_001

Geometric discrepancy: 0.4368

The information below is about HL_7RQB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_99167.2

Basepair signature

cWW-F-F-cSH-F-F

Number of instances in this motif group

6

Unit IDs

4V6S|1|AB|U|59
4V6S|1|AB|G|60
4V6S|1|AB|C|61
4V6S|1|AB|U|62
4V6S|1|AB|A|63
4V6S|1|AB|A|64
4V6S|1|AB|U|65
4V6S|1|AB|C|66
4V6S|1|AB|U|67
4V6S|1|AB|G|68

Current chains

Chain AB

23S ribomosomal RNA

Nearby chains

Chain A0

50S ribosomal protein L29

Chain A5

50S ribosomal protein L34

Chain AV

50S ribosomal protein L23