HL_4V6S_011

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

4V6S|1|AB|A|311

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6S_011 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.2746

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

22

Unit IDs

4V6S|1|AB|C|305
4V6S|1|AB|U|306
4V6S|1|AB|G|307
4V6S|1|AB|G|308
4V6S|1|AB|A|309
4V6S|1|AB|A|310
4V6S|1|AB|A|311
4V6S|1|AB|G|312

Current chains

Chain AB

23S ribomosomal RNA

Nearby chains

Chain AW

50S ribosomal protein L24