HL_4V6S_027

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

CAUCCCG

Length

7 nucleotides

Bulged bases

4V6S|1|AB|U|887

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6S_027 not in the Motif Atlas

Geometric match to HL_4V88_194

Geometric discrepancy: 0.3599

The information below is about HL_4V88_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50142.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

4V6S|1|AB|C|885
4V6S|1|AB|A|886
4V6S|1|AB|U|887
4V6S|1|AB|C|888
4V6S|1|AB|C|889
4V6S|1|AB|C|890
4V6S|1|AB|G|891

Current chains

Chain AB

23S ribomosomal RNA

Nearby chains

Chain BO

30S ribosomal protein S13

Chain BU

30S ribosomal protein S19